J3_5ZEP_013
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ZEP_013 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.1131
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
5ZEP|1|A|U|2314
5ZEP|1|A|U|2315
5ZEP|1|A|G|2316
*
5ZEP|1|A|C|2419
5ZEP|1|A|U|2420
5ZEP|1|A|A|2421
5ZEP|1|A|A|2422
5ZEP|1|A|C|2423
*
5ZEP|1|A|G|2447
5ZEP|1|A|G|2448
5ZEP|1|A|A|2449
5ZEP|1|A|C|2450
5ZEP|1|A|A|2451
5ZEP|1|A|G|2452
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain H
- 50S ribosomal protein L9
- Chain Y
- 50S ribosomal protein L28
Coloring options: