J3_5ZEP_015

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5ZEP|1|A|A|2742, 5ZEP|1|A|U|2743

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZEP_015 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1107

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

5ZEP|1|A|C|2741
5ZEP|1|A|A|2742
5ZEP|1|A|U|2743
5ZEP|1|A|C|2744
*
5ZEP|1|A|G|2769
5ZEP|1|A|U|2770
5ZEP|1|A|U|2771
*
5ZEP|1|A|A|2785
5ZEP|1|A|U|2786
5ZEP|1|A|U|2787
5ZEP|1|A|A|2788
5ZEP|1|A|A|2789
5ZEP|1|A|A|2790
5ZEP|1|A|G|2791

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L14