J3_5ZEP_021
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ZEP_021 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0752
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
5ZEP|1|a|C|918
5ZEP|1|a|A|919
5ZEP|1|a|A|920
5ZEP|1|a|G|921
*
5ZEP|1|a|C|1326
5ZEP|1|a|U|1327
5ZEP|1|a|A|1328
5ZEP|1|a|G|1329
5ZEP|1|a|U|1330
5ZEP|1|a|A|1331
5ZEP|1|a|A|1332
*
5ZEP|1|a|U|1355
5ZEP|1|a|G|1356
5ZEP|1|a|A|1357
5ZEP|1|a|A|1358
5ZEP|1|a|U|1359
5ZEP|1|a|A|1360
5ZEP|1|a|C|1361
5ZEP|1|a|G|1362
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain w
- Transfer RNA; tRNA
Coloring options: