J3_5ZEP_026
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ZEP_026 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1213
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5ZEP|1|a|C|1043
5ZEP|1|a|G|1044
5ZEP|1|a|U|1045
5ZEP|1|a|C|1046
5ZEP|1|a|A|1047
5ZEP|1|a|G|1048
*
5ZEP|1|a|C|1087
5ZEP|1|a|G|1088
5ZEP|1|a|C|1089
5ZEP|1|a|A|1090
5ZEP|1|a|A|1091
5ZEP|1|a|C|1092
5ZEP|1|a|C|1093
*
5ZEP|1|a|G|1168
5ZEP|1|a|A|1169
5ZEP|1|a|U|1170
5ZEP|1|a|G|1171
5ZEP|1|a|A|1172
5ZEP|1|a|C|1173
5ZEP|1|a|G|1174
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain c
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S5
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
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