J3_5ZEP_029
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 5ZEP|1|a|U|1221, 5ZEP|1|a|U|1284
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ZEP_029 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.133
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
5ZEP|1|a|C|1218
5ZEP|1|a|A|1219
5ZEP|1|a|A|1220
5ZEP|1|a|U|1221
5ZEP|1|a|G|1222
*
5ZEP|1|a|C|1278
5ZEP|1|a|U|1279
5ZEP|1|a|C|1280
5ZEP|1|a|A|1281
5ZEP|1|a|G|1282
5ZEP|1|a|U|1283
5ZEP|1|a|U|1284
5ZEP|1|a|C|1285
*
5ZEP|1|a|G|1316
5ZEP|1|a|U|1317
5ZEP|1|a|C|1318
5ZEP|1|a|G|1319
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S13
- Chain w
- Transfer RNA; tRNA
Coloring options: