J3_5ZEP_030
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GC*GUGAAAAGUAC*GAGUGAAAGAGUACC
- Length
- 28 nucleotides
- Bulged bases
- 5ZEP|1|A|G|591, 5ZEP|1|A|A|595
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ZEP_030 not in the Motif Atlas
- Homologous match to J3_5J7L_066
- Geometric discrepancy: 0.1556
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5ZEP|1|A|G|27
5ZEP|1|A|C|28
*
5ZEP|1|A|G|562
5ZEP|1|A|U|563
5ZEP|1|A|G|564
5ZEP|1|A|A|565
5ZEP|1|A|A|566
5ZEP|1|A|A|567
5ZEP|1|A|A|568
5ZEP|1|A|G|569
5ZEP|1|A|U|570
5ZEP|1|A|A|571
5ZEP|1|A|C|572
*
5ZEP|1|A|G|583
5ZEP|1|A|A|584
5ZEP|1|A|G|585
5ZEP|1|A|U|586
5ZEP|1|A|G|587
5ZEP|1|A|A|588
5ZEP|1|A|A|589
5ZEP|1|A|A|590
5ZEP|1|A|G|591
5ZEP|1|A|A|592
5ZEP|1|A|G|593
5ZEP|1|A|U|594
5ZEP|1|A|A|595
5ZEP|1|A|C|596
5ZEP|1|A|C|597
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain R
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L22
- Chain V
- 50S ribosomal protein L24
Coloring options: