J3_5ZET_010

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

5ZET|1|A|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZET_010 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1337

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5ZET|1|A|U|1459
5ZET|1|A|C|1460
5ZET|1|A|G|1461
5ZET|1|A|G|1462
5ZET|1|A|G|1463
5ZET|1|A|A|1464
5ZET|1|A|C|1465
*
5ZET|1|A|G|1496
5ZET|1|A|A|1497
5ZET|1|A|C|1498
5ZET|1|A|A|1499
5ZET|1|A|A|1500
*
5ZET|1|A|U|1517
5ZET|1|A|A|1518

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L34

Chain U

50S ribosomal protein L23