J3_5ZEU_008

3D structure

PDB id

5ZEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

5ZEU|1|a|U|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZEU_008 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.185

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

5ZEU|1|a|U|972
5ZEU|1|a|U|973
5ZEU|1|a|U|974
5ZEU|1|a|G|975
*
5ZEU|1|a|C|1025
5ZEU|1|a|A|1026
5ZEU|1|a|G|1027
*
5ZEU|1|a|C|1191
5ZEU|1|a|U|1192
5ZEU|1|a|U|1193
5ZEU|1|a|A|1194
5ZEU|1|a|U|1195
5ZEU|1|a|G|1196

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z