J3_5ZEU_011

3D structure

PDB id

5ZEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZEU_011 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.103

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5ZEU|1|a|U|1053
5ZEU|1|a|G|1054
*
5ZEU|1|a|U|1063
5ZEU|1|a|G|1064
5ZEU|1|a|U|1065
5ZEU|1|a|U|1066
5ZEU|1|a|G|1067
*
5ZEU|1|a|C|1078
5ZEU|1|a|G|1079
5ZEU|1|a|C|1080
5ZEU|1|a|A|1081
5ZEU|1|a|A|1082

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain e

30S ribosomal protein S5