J3_5ZLU_001

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZLU_001 not in the Motif Atlas

Homologous match to J3_6CZR_015

Geometric discrepancy: 0.2634

The information below is about J3_6CZR_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5ZLU|1|G|G|46
5ZLU|1|G|C|47
*
5ZLU|1|G|G|361
5ZLU|1|G|G|362
5ZLU|1|G|A|363
5ZLU|1|G|A|364
5ZLU|1|G|U|365
5ZLU|1|G|C|366
5ZLU|1|G|U|367
*
5ZLU|1|G|A|393
5ZLU|1|G|G|394
5ZLU|1|G|C|395

Current chains

Chain G

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S12

Chain U

30S ribosomal protein S16