J3_5ZLU_017

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

5ZLU|1|V|C|1607, 5ZLU|1|V|A|1609, 5ZLU|1|V|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ZLU_017 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.2345

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5ZLU|1|V|C|1306
5ZLU|1|V|A|1307
5ZLU|1|V|A|1308
5ZLU|1|V|G|1309
*
5ZLU|1|V|C|1605
5ZLU|1|V|G|1606
5ZLU|1|V|C|1607
5ZLU|1|V|A|1608
5ZLU|1|V|A|1609
5ZLU|1|V|A|1610
5ZLU|1|V|C|1611
*
5ZLU|1|V|G|1620
5ZLU|1|V|U|1621
5ZLU|1|V|G|1622

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain z

50S ribosomal protein L34