J3_6AWD_001

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6AWD_001 not in the Motif Atlas

Homologous match to J3_6CZR_015

Geometric discrepancy: 0.371

The information below is about J3_6CZR_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6AWD|1|A|G|46
6AWD|1|A|C|47
*
6AWD|1|A|G|361
6AWD|1|A|G|362
6AWD|1|A|A|363
6AWD|1|A|A|364
6AWD|1|A|U|365
6AWD|1|A|A|366
6AWD|1|A|U|367
*
6AWD|1|A|A|393
6AWD|1|A|G|394
6AWD|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S12

Chain S

30S ribosomal protein S16