J3_6AWD_002
3D structure
- PDB id
- 6AWD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- CGG*CUUG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6AWD_002 not in the Motif Atlas
- Geometric match to J3_1G1X_001
- Geometric discrepancy: 0.2966
- The information below is about J3_1G1X_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6AWD|1|A|C|586
6AWD|1|A|G|587
6AWD|1|A|G|588
*
6AWD|1|A|C|651
6AWD|1|A|U|652
6AWD|1|A|U|653
6AWD|1|A|G|654
*
6AWD|1|A|C|754
6AWD|1|A|G|755
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S8
- Chain O
- 30S ribosomal protein S12
- Chain R
- 30S ribosomal protein S15
- Chain T
- 30S ribosomal protein S17
Coloring options: