J3_6AWD_007

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

6AWD|1|A|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6AWD_007 not in the Motif Atlas

Homologous match to J3_6CZR_021

Geometric discrepancy: 0.4119

The information below is about J3_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6AWD|1|A|C|990
6AWD|1|A|U|991
6AWD|1|A|U|992
6AWD|1|A|G|993
*
6AWD|1|A|C|1045
6AWD|1|A|A|1046
6AWD|1|A|G|1047
*
6AWD|1|A|C|1210
6AWD|1|A|U|1211
6AWD|1|A|U|1212
6AWD|1|A|A|1213
6AWD|1|A|C|1214
6AWD|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S14