J3_6AWD_015
3D structure
- PDB id
- 6AWD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- UAU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 6AWD|1|A|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6AWD_015 not in the Motif Atlas
- Geometric match to J3_5J7L_010
- Geometric discrepancy: 0.3032
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6AWD|1|A|U|1116
6AWD|1|A|A|1117
6AWD|1|A|U|1118
*
6AWD|1|A|A|1155
6AWD|1|A|G|1156
6AWD|1|A|A|1157
6AWD|1|A|C|1158
*
6AWD|1|A|G|1181
6AWD|1|A|G|1182
6AWD|1|A|U|1183
6AWD|1|A|G|1184
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S2
- Chain L
- 30S ribosomal protein S9
- Chain M
- 30S ribosomal protein S10
- Chain Q
- 30S ribosomal protein S14
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