J3_6AZ1_009

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCGGACA*UGAAUG*CUCAAUG

Length

20 nucleotides

Bulged bases

6AZ1|1|1|G|1569, 6AZ1|1|1|A|1846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6AZ1|1|1|C|1567
6AZ1|1|1|C|1568
6AZ1|1|1|G|1569
6AZ1|1|1|G|1570
6AZ1|1|1|A|1571
6AZ1|1|1|C|1572
6AZ1|1|1|A|1573
*
6AZ1|1|1|U|1614
6AZ1|1|1|G|1615
6AZ1|1|1|A|1616
6AZ1|1|1|A|1617
6AZ1|1|1|U|1618
6AZ1|1|1|G|1619
*
6AZ1|1|1|C|1843
6AZ1|1|1|U|1844
6AZ1|1|1|C|1845
6AZ1|1|1|A|1846
6AZ1|1|1|A|1847
6AZ1|1|1|U|1848
6AZ1|1|1|G|1849

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain N

ribosomal protein S10e

Chain S

ribosomal protein S14

Chain f

ribosomal protein S31e