J3_6AZ1_011

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*UGUUUG*CGUCAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6AZ1|1|1|U|1645
6AZ1|1|1|G|1646
*
6AZ1|1|1|U|1655
6AZ1|1|1|G|1656
6AZ1|1|1|U|1657
6AZ1|1|1|U|1658
6AZ1|1|1|U|1659
6AZ1|1|1|G|1660
*
6AZ1|1|1|C|1669
6AZ1|1|1|G|1670
6AZ1|1|1|U|1671
6AZ1|1|1|C|1672
6AZ1|1|1|A|1673
6AZ1|1|1|A|1674

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain B

ribosomal protein S2

Chain F

ribosomal protein S5

Chain V

ribosomal protein S17e