J3_6AZ1_014

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAAACG*CGAAC*GGAAAC

Length

19 nucleotides

Bulged bases

6AZ1|1|1|A|1893, 6AZ1|1|1|A|1933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6AZ1|1|1|G|1889
6AZ1|1|1|A|1890
6AZ1|1|1|A|1891
6AZ1|1|1|A|1892
6AZ1|1|1|A|1893
6AZ1|1|1|A|1894
6AZ1|1|1|C|1895
6AZ1|1|1|G|1896
*
6AZ1|1|1|C|1905
6AZ1|1|1|G|1906
6AZ1|1|1|A|1907
6AZ1|1|1|A|1908
6AZ1|1|1|C|1909
*
6AZ1|1|1|G|1930
6AZ1|1|1|G|1931
6AZ1|1|1|A|1932
6AZ1|1|1|A|1933
6AZ1|1|1|A|1934
6AZ1|1|1|C|1935

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain C

ribosomal protein S3

Chain M

ribosomal protein S10

Chain N

ribosomal protein S10e

Chain S

ribosomal protein S14