J3_6AZ1_017
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUAAUU(M1Y)*(OMG)GGGAACUUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 6AZ1|1|1|G|1551, 6AZ1|1|1|G|1553, 6AZ1|1|1|A|1555, 6AZ1|1|1|G|1858
- QA status
- Modified nucleotides: M1Y, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6AZ1_017 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0774
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6AZ1|1|1|U|1532
6AZ1|1|1|U|1533
6AZ1|1|1|U|1534
6AZ1|1|1|A|1535
6AZ1|1|1|A|1536
6AZ1|1|1|U|1537
6AZ1|1|1|U|1538
6AZ1|1|1|M1Y|1539
*
6AZ1|1|1|OMG|1550
6AZ1|1|1|G|1551
6AZ1|1|1|G|1552
6AZ1|1|1|G|1553
6AZ1|1|1|A|1554
6AZ1|1|1|A|1555
6AZ1|1|1|C|1556
6AZ1|1|1|U|1557
6AZ1|1|1|U|1558
6AZ1|1|1|U|1559
6AZ1|1|1|A|1560
6AZ1|1|1|C|1561
*
6AZ1|1|1|G|1855
6AZ1|1|1|G|1856
6AZ1|1|1|C|1857
6AZ1|1|1|G|1858
6AZ1|1|1|A|1859
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain M
- ribosomal protein S10
- Chain R
- ribosomal protein S13
- Chain S
- ribosomal protein S14
- Chain W
- ribosomal protein S19
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