J3_6AZ1_019
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGC*GGAUUC*GUGAAAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6AZ1|1|1|U|1815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6AZ1_019 not in the Motif Atlas
- Homologous match to J3_8P9A_083
- Geometric discrepancy: 0.5189
- The information below is about J3_8P9A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88233.1
- Basepair signature
- cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6AZ1|1|1|A|1688
6AZ1|1|1|G|1689
6AZ1|1|1|C|1690
*
6AZ1|1|1|G|1785
6AZ1|1|1|G|1786
6AZ1|1|1|A|1787
6AZ1|1|1|U|1788
6AZ1|1|1|U|1789
6AZ1|1|1|C|1790
*
6AZ1|1|1|G|1808
6AZ1|1|1|U|1809
6AZ1|1|1|G|1810
6AZ1|1|1|A|1811
6AZ1|1|1|A|1812
6AZ1|1|1|A|1813
6AZ1|1|1|U|1814
6AZ1|1|1|U|1815
6AZ1|1|1|U|1816
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain H
- ribosomal protein S7
- Chain L
- ribosomal protein S9
- Chain M
- ribosomal protein S10
- Chain S
- ribosomal protein S14
- Chain V
- ribosomal protein S17e
- Chain g
- LACK1
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