J3_6B4V_002

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGG*CUAGAC*GUGACG

Length

15 nucleotides

Bulged bases

6B4V|1|A|A|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|A|C|586
6B4V|1|A|G|587
6B4V|1|A|G|588
*
6B4V|1|A|C|651
6B4V|1|A|U|652
6B4V|1|A|A|653
6B4V|1|A|G|654
6B4V|1|A|A|655
6B4V|1|A|C|656
*
6B4V|1|A|G|750
6B4V|1|A|U|751
6B4V|1|A|G|752
6B4V|1|A|A|753
6B4V|1|A|C|754
6B4V|1|A|G|755

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain QA

30S ribosomal protein S8

Chain UA

30S ribosomal protein S12

Chain XA

30S ribosomal protein S15

Chain ZA

30S ribosomal protein S17