J3_6B4V_006
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 6B4V|1|A|A|975, 6B4V|1|A|G|976, 6B4V|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6B4V_006 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1154
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6B4V|1|A|U|955
6B4V|1|A|U|956
6B4V|1|A|U|957
6B4V|1|A|A|958
6B4V|1|A|A|959
6B4V|1|A|U|960
6B4V|1|A|U|961
6B4V|1|A|C|962
*
6B4V|1|A|G|973
6B4V|1|A|A|974
6B4V|1|A|A|975
6B4V|1|A|G|976
6B4V|1|A|A|977
6B4V|1|A|A|978
6B4V|1|A|C|979
6B4V|1|A|C|980
6B4V|1|A|U|981
6B4V|1|A|U|982
6B4V|1|A|A|983
6B4V|1|A|C|984
*
6B4V|1|A|G|1221
6B4V|1|A|G|1222
6B4V|1|A|C|1223
6B4V|1|A|G|1224
6B4V|1|A|A|1225
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain BB
- 30S ribosomal protein S19
- Chain JA
- Peptide chain release factor 1
- Chain SA
- 30S ribosomal protein S10
- Chain VA
- 30S ribosomal protein S13
- Chain WA
- 30S ribosomal protein S14 type Z
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