J3_6B4V_009
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- 6B4V|1|A|A|1101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6B4V_009 not in the Motif Atlas
- Homologous match to J3_6CZR_024
- Geometric discrepancy: 0.1671
- The information below is about J3_6CZR_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04260.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6B4V|1|A|U|1073
6B4V|1|A|G|1074
*
6B4V|1|A|U|1083
6B4V|1|A|G|1084
6B4V|1|A|U|1085
6B4V|1|A|U|1086
6B4V|1|A|G|1087
*
6B4V|1|A|C|1098
6B4V|1|A|G|1099
6B4V|1|A|C|1100
6B4V|1|A|A|1101
6B4V|1|A|A|1102
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain KA
- 30S ribosomal protein S2
- Chain NA
- 30S ribosomal protein S5
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