J3_6B4V_010

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGC*GGAC*GGAG

Length

11 nucleotides

Bulged bases

6B4V|1|A|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6B4V_010 not in the Motif Atlas

Homologous match to J3_5J7L_010

Geometric discrepancy: 0.2498

The information below is about J3_5J7L_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.4

Basepair signature

cWW-F-cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

6B4V|1|A|C|1116
6B4V|1|A|G|1117
6B4V|1|A|C|1118
*
6B4V|1|A|G|1155
6B4V|1|A|G|1156
6B4V|1|A|A|1157
6B4V|1|A|C|1158
*
6B4V|1|A|G|1181
6B4V|1|A|G|1182
6B4V|1|A|A|1183
6B4V|1|A|G|1184

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain KA

30S ribosomal protein S2

Chain RA

30S ribosomal protein S9

Chain WA

30S ribosomal protein S14 type Z