J3_6B4V_040

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6B4V_040 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0948

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6B4V|1|FB|C|698
6B4V|1|FB|A|699
6B4V|1|FB|G|700
*
6B4V|1|FB|C|732
6B4V|1|FB|G|733
6B4V|1|FB|A|734
6B4V|1|FB|A|735
6B4V|1|FB|C|736
*
6B4V|1|FB|G|760
6B4V|1|FB|A|761
6B4V|1|FB|U|762
6B4V|1|FB|G|763

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain IB

50S ribosomal protein L2