J3_6B4V_042

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6B4V|1|FB|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6B4V_042 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0795

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6B4V|1|FB|C|1306
6B4V|1|FB|A|1307
6B4V|1|FB|A|1308
6B4V|1|FB|G|1309
*
6B4V|1|FB|C|1605
6B4V|1|FB|G|1606
6B4V|1|FB|C|1607
6B4V|1|FB|A|1608
6B4V|1|FB|A|1609
6B4V|1|FB|A|1610
6B4V|1|FB|C|1611
*
6B4V|1|FB|G|1620
6B4V|1|FB|U|1621
6B4V|1|FB|G|1622

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain IC

50S ribosomal protein L34