J3_6B4V_048

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAUAG*CGCC*GGUCG

Length

15 nucleotides

Bulged bases

6B4V|1|GB|C|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|GB|C|11
6B4V|1|GB|C|12
6B4V|1|GB|A|13
6B4V|1|GB|U|14
6B4V|1|GB|A|15
6B4V|1|GB|G|16
*
6B4V|1|GB|C|68
6B4V|1|GB|G|69
6B4V|1|GB|C|70
6B4V|1|GB|C|71
*
6B4V|1|GB|G|105
6B4V|1|GB|G|106
6B4V|1|GB|U|107
6B4V|1|GB|C|108
6B4V|1|GB|G|109

Current chains

Chain GB

5S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L25

Chain BC

50S ribosomal protein L27

Chain FB

Large subunit ribosomal RNA; LSU rRNA

Chain TB

50S ribosomal protein L18