J3_6B4V_062

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGG(4SU)GGAGCAGCCUGGUAGCUCGUCG*CGAAGGUCGU*GCCCC

Length

41 nucleotides

Bulged bases

6B4V|1|D|C|16, 6B4V|1|D|G|18, 6B4V|1|D|G|19, 6B4V|1|D|U|20, 6B4V|1|D|U|47

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|D|G|5
6B4V|1|D|G|6
6B4V|1|D|G|7
6B4V|1|D|4SU|8
6B4V|1|D|G|9
6B4V|1|D|G|10
6B4V|1|D|A|11
6B4V|1|D|G|12
6B4V|1|D|C|13
6B4V|1|D|A|14
6B4V|1|D|G|15
6B4V|1|D|C|16
6B4V|1|D|C|17
6B4V|1|D|U|17|||A
6B4V|1|D|G|18
6B4V|1|D|G|19
6B4V|1|D|U|20
6B4V|1|D|A|21
6B4V|1|D|G|22
6B4V|1|D|C|23
6B4V|1|D|U|24
6B4V|1|D|C|25
6B4V|1|D|G|26
6B4V|1|D|U|27
6B4V|1|D|C|28
6B4V|1|D|G|29
*
6B4V|1|D|C|41
6B4V|1|D|G|42
6B4V|1|D|A|43
6B4V|1|D|A|44
6B4V|1|D|G|45
6B4V|1|D|G|46
6B4V|1|D|U|47
6B4V|1|D|C|48
6B4V|1|D|G|49
6B4V|1|D|U|50
*
6B4V|1|D|G|64
6B4V|1|D|C|65
6B4V|1|D|C|66
6B4V|1|D|C|67
6B4V|1|D|C|68

Current chains

Chain D

tRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain DA

50S ribosomal protein L33

Chain PA

30S ribosomal protein S7

Chain TA

30S ribosomal protein S11