J3_6B4V_063

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCCUAAG*UAGGAAUCUUC*GAGC

Length

22 nucleotides

Bulged bases

6B4V|1|EB|C|48, 6B4V|1|EB|A|51, 6B4V|1|EB|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|EB|G|46
6B4V|1|EB|C|47
6B4V|1|EB|C|48
6B4V|1|EB|U|49
6B4V|1|EB|A|50
6B4V|1|EB|A|51
6B4V|1|EB|G|52
*
6B4V|1|EB|U|359
6B4V|1|EB|A|360
6B4V|1|EB|G|361
6B4V|1|EB|G|362
6B4V|1|EB|A|363
6B4V|1|EB|A|364
6B4V|1|EB|U|365
6B4V|1|EB|C|366
6B4V|1|EB|U|367
6B4V|1|EB|U|368
6B4V|1|EB|C|369
*
6B4V|1|EB|G|392
6B4V|1|EB|A|393
6B4V|1|EB|G|394
6B4V|1|EB|C|395

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S16

Chain YC

30S ribosomal protein S12