J3_6B4V_074
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6B4V|1|FB|A|2388, 6B4V|1|FB|U|2390, 6B4V|1|FB|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6B4V_074 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.1112
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6B4V|1|FB|G|2282
6B4V|1|FB|C|2283
6B4V|1|FB|C|2284
*
6B4V|1|FB|G|2384
6B4V|1|FB|C|2385
6B4V|1|FB|C|2386
6B4V|1|FB|U|2387
6B4V|1|FB|A|2388
6B4V|1|FB|G|2389
6B4V|1|FB|U|2390
6B4V|1|FB|G|2391
6B4V|1|FB|A|2392
6B4V|1|FB|A|2393
6B4V|1|FB|C|2394
6B4V|1|FB|C|2395
*
6B4V|1|FB|G|2421
6B4V|1|FB|A|2422
6B4V|1|FB|U|2423
6B4V|1|FB|C|2424
6B4V|1|FB|A|2425
6B4V|1|FB|A|2426
6B4V|1|FB|C|2427
Current chains
- Chain FB
- 23S ribosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L27
- Chain CC
- 50S ribosomal protein L28
- Chain HB
- Transfer RNA; tRNA
- Chain HC
- 50S ribosomal protein L33
- Chain JC
- 50S ribosomal protein L35
- Chain QB
- 50S ribosomal protein L15
Coloring options: