J3_6B4V_076
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GC*GGAAUCU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6B4V_076 not in the Motif Atlas
- Geometric match to J3_4LFB_010
- Geometric discrepancy: 0.1117
- The information below is about J3_4LFB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.1
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6B4V|1|A|G|46
6B4V|1|A|C|47
*
6B4V|1|A|G|361
6B4V|1|A|G|362
6B4V|1|A|A|363
6B4V|1|A|A|364
6B4V|1|A|U|365
6B4V|1|A|C|366
6B4V|1|A|U|367
*
6B4V|1|A|A|393
6B4V|1|A|G|394
6B4V|1|A|C|395
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain UA
- 30S ribosomal protein S12
- Chain YA
- 30S ribosomal protein S16
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