J3_6BOH_041

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_041 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.086

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6BOH|1|GB|C|698
6BOH|1|GB|A|699
6BOH|1|GB|G|700
*
6BOH|1|GB|C|732
6BOH|1|GB|G|733
6BOH|1|GB|A|734
6BOH|1|GB|A|735
6BOH|1|GB|C|736
*
6BOH|1|GB|G|760
6BOH|1|GB|A|761
6BOH|1|GB|U|762
6BOH|1|GB|G|763

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L2