J3_6BOH_042

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCC*GAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAGUGC*GCUCACUGGU

Length

50 nucleotides

Bulged bases

6BOH|1|GB|U|1061, 6BOH|1|GB|U|1065, 6BOH|1|GB|U|1066, 6BOH|1|GB|A|1070, 6BOH|1|GB|A|1073, 6BOH|1|GB|C|1075, 6BOH|1|GB|C|1076, 6BOH|1|GB|A|1077, 6BOH|1|GB|U|1078, 6BOH|1|GB|C|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BOH|1|GB|G|1051
6BOH|1|GB|C|1052
6BOH|1|GB|C|1053
*
6BOH|1|GB|G|1056
6BOH|1|GB|A|1057
6BOH|1|GB|G|1058
6BOH|1|GB|G|1059
6BOH|1|GB|U|1060
6BOH|1|GB|U|1061
6BOH|1|GB|G|1062
6BOH|1|GB|G|1063
6BOH|1|GB|C|1064
6BOH|1|GB|U|1065
6BOH|1|GB|U|1066
6BOH|1|GB|A|1067
6BOH|1|GB|G|1068
6BOH|1|GB|A|1069
6BOH|1|GB|A|1070
6BOH|1|GB|G|1071
6BOH|1|GB|C|1072
6BOH|1|GB|A|1073
6BOH|1|GB|G|1074
6BOH|1|GB|C|1075
6BOH|1|GB|C|1076
6BOH|1|GB|A|1077
6BOH|1|GB|U|1078
6BOH|1|GB|C|1079
6BOH|1|GB|C|1080
6BOH|1|GB|U|1081
6BOH|1|GB|U|1082
6BOH|1|GB|U|1083
6BOH|1|GB|A|1084
6BOH|1|GB|A|1085
6BOH|1|GB|A|1086
6BOH|1|GB|G|1087
6BOH|1|GB|A|1088
6BOH|1|GB|G|1089
6BOH|1|GB|U|1090
6BOH|1|GB|G|1091
6BOH|1|GB|C|1092
*
6BOH|1|GB|G|1099
6BOH|1|GB|C|1100
6BOH|1|GB|U|1101
6BOH|1|GB|C|1102
6BOH|1|GB|A|1103
6BOH|1|GB|C|1104
6BOH|1|GB|U|1105
6BOH|1|GB|G|1106
6BOH|1|GB|G|1107
6BOH|1|GB|U|1108

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain LC

50S ribosomal protein L36

Chain NB

50S ribosomal protein L6