J3_6BOH_044

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6BOH|1|GB|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_044 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0803

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6BOH|1|GB|C|1306
6BOH|1|GB|A|1307
6BOH|1|GB|A|1308
6BOH|1|GB|G|1309
*
6BOH|1|GB|C|1605
6BOH|1|GB|G|1606
6BOH|1|GB|C|1607
6BOH|1|GB|A|1608
6BOH|1|GB|A|1609
6BOH|1|GB|A|1610
6BOH|1|GB|C|1611
*
6BOH|1|GB|G|1620
6BOH|1|GB|U|1621
6BOH|1|GB|G|1622

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain JC

50S ribosomal protein L34