3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CAAG*CGCAAAC*GUG
Length
14 nucleotides
Bulged bases
6BOH|1|GB|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6BOH_044 not in the Motif Atlas
Homologous match to J3_7RQB_008
Geometric discrepancy: 0.0803
The information below is about J3_7RQB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_16623.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

6BOH|1|GB|C|1306
6BOH|1|GB|A|1307
6BOH|1|GB|A|1308
6BOH|1|GB|G|1309
*
6BOH|1|GB|C|1605
6BOH|1|GB|G|1606
6BOH|1|GB|C|1607
6BOH|1|GB|A|1608
6BOH|1|GB|A|1609
6BOH|1|GB|A|1610
6BOH|1|GB|C|1611
*
6BOH|1|GB|G|1620
6BOH|1|GB|U|1621
6BOH|1|GB|G|1622

Current chains

Chain GB
23S ribosomal RNA

Nearby chains

Chain JC
50S ribosomal protein L34

Coloring options:


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