J3_6BOH_050

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAUAG*CG*UCG

Length

11 nucleotides

Bulged bases

6BOH|1|HB|U|14, 6BOH|1|HB|C|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_050 not in the Motif Atlas

Homologous match to J3_7RQB_015

Geometric discrepancy: 0.179

The information below is about J3_7RQB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08462.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6BOH|1|HB|C|11
6BOH|1|HB|C|12
6BOH|1|HB|A|13
6BOH|1|HB|U|14
6BOH|1|HB|A|15
6BOH|1|HB|G|16
*
6BOH|1|HB|C|68
6BOH|1|HB|G|69
*
6BOH|1|HB|U|107
6BOH|1|HB|C|108
6BOH|1|HB|G|109

Current chains

Chain HB

5S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L25

Chain CC

50S ribosomal protein L27

Chain GB

Large subunit ribosomal RNA; LSU rRNA