J3_6BOH_053
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- 6BOH|1|A|C|1378
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6BOH_053 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.118
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
6BOH|1|A|C|936
6BOH|1|A|A|937
6BOH|1|A|A|938
6BOH|1|A|G|939
*
6BOH|1|A|C|1344
6BOH|1|A|U|1345
6BOH|1|A|A|1346
6BOH|1|A|G|1347
6BOH|1|A|U|1348
6BOH|1|A|A|1349
6BOH|1|A|A|1350
*
6BOH|1|A|U|1372
6BOH|1|A|G|1373
6BOH|1|A|A|1374
6BOH|1|A|A|1375
6BOH|1|A|U|1376
6BOH|1|A|A|1377
6BOH|1|A|C|1378
6BOH|1|A|G|1379
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- Transfer RNA; tRNA
- Chain QA
- 30S ribosomal protein S7
- Chain SA
- 30S ribosomal protein S9
Coloring options: