J3_6BOH_068

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

6BOH|1|FB|U|1212, 6BOH|1|FB|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_068 not in the Motif Atlas

Homologous match to J3_6CZR_021

Geometric discrepancy: 0.3116

The information below is about J3_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BOH|1|FB|C|990
6BOH|1|FB|U|991
6BOH|1|FB|U|992
6BOH|1|FB|G|993
*
6BOH|1|FB|C|1045
6BOH|1|FB|A|1046
6BOH|1|FB|G|1047
*
6BOH|1|FB|C|1210
6BOH|1|FB|U|1211
6BOH|1|FB|U|1212
6BOH|1|FB|A|1213
6BOH|1|FB|C|1214
6BOH|1|FB|G|1215

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S14 type Z

Chain PC

Peptide chain release factor 1