J3_6BOH_075
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6BOH|1|GB|A|2388, 6BOH|1|GB|U|2390, 6BOH|1|GB|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6BOH_075 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.0952
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6BOH|1|GB|G|2282
6BOH|1|GB|C|2283
6BOH|1|GB|C|2284
*
6BOH|1|GB|G|2384
6BOH|1|GB|C|2385
6BOH|1|GB|C|2386
6BOH|1|GB|U|2387
6BOH|1|GB|A|2388
6BOH|1|GB|G|2389
6BOH|1|GB|U|2390
6BOH|1|GB|G|2391
6BOH|1|GB|A|2392
6BOH|1|GB|A|2393
6BOH|1|GB|C|2394
6BOH|1|GB|C|2395
*
6BOH|1|GB|G|2421
6BOH|1|GB|A|2422
6BOH|1|GB|U|2423
6BOH|1|GB|C|2424
6BOH|1|GB|A|2425
6BOH|1|GB|A|2426
6BOH|1|GB|C|2427
Current chains
- Chain GB
- 23S ribosomal RNA
Nearby chains
- Chain CC
- 50S ribosomal protein L27
- Chain DC
- 50S ribosomal protein L28
- Chain IB
- Transfer RNA; tRNA
- Chain IC
- 50S ribosomal protein L33
- Chain KC
- 50S ribosomal protein L35
- Chain RB
- 50S ribosomal protein L15
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