J3_6BOH_076
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGGUCGUCGG(5MU)(PSU)CAAAUCCGGCC
- Length
- 31 nucleotides
- Bulged bases
- 6BOH|1|IA|4SU|8, 6BOH|1|IA|U|47
- QA status
- Modified nucleotides: 4SU, 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6BOH|1|IA|G|7
6BOH|1|IA|4SU|8
6BOH|1|IA|G|9
6BOH|1|IA|G|10
*
6BOH|1|IA|C|25
6BOH|1|IA|G|26
6BOH|1|IA|U|27
*
6BOH|1|IA|A|43
6BOH|1|IA|A|44
6BOH|1|IA|G|45
6BOH|1|IA|G|46
6BOH|1|IA|U|47
6BOH|1|IA|C|48
6BOH|1|IA|G|49
6BOH|1|IA|U|50
6BOH|1|IA|C|51
6BOH|1|IA|G|52
6BOH|1|IA|G|53
6BOH|1|IA|5MU|54
6BOH|1|IA|PSU|55
6BOH|1|IA|C|56
6BOH|1|IA|A|57
6BOH|1|IA|A|58
6BOH|1|IA|A|59
6BOH|1|IA|U|60
6BOH|1|IA|C|61
6BOH|1|IA|C|62
6BOH|1|IA|G|63
6BOH|1|IA|G|64
6BOH|1|IA|C|65
6BOH|1|IA|C|66
Current chains
- Chain IA
- tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- 50S ribosomal protein L5
- Chain JA
- Peptide chain release factor 1
- Chain N
- 50S ribosomal protein L16
- Chain WA
- 30S ribosomal protein S13
- Chain X
- 50S ribosomal protein L27
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