Loop J3_6BOH

3D structure

PDB id: 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description: Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å

Loop

Sequence: GGGG(4SU)GGAGCAGCCUGGUAGCUCGUC*GAAGGUCGUC*GGCCCCC
Length: 43 nucleotides
Bulged bases: 6BOH|1|IB|G|6, 6BOH|1|IB|C|16, 6BOH|1|IB|C|17, 6BOH|1|IB|U|17|||A, 6BOH|1|IB|U|20, 6BOH|1|IB|A|21, 6BOH|1|IB|U|47
QA status: Modified nucleotides: 4SU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6BOH|1|IB|G|4
6BOH|1|IB|G|5
6BOH|1|IB|G|6
6BOH|1|IB|G|7
6BOH|1|IB|4SU|8
6BOH|1|IB|G|9
6BOH|1|IB|G|10
6BOH|1|IB|A|11
6BOH|1|IB|G|12
6BOH|1|IB|C|13
6BOH|1|IB|A|14
6BOH|1|IB|G|15
6BOH|1|IB|C|16
6BOH|1|IB|C|17
6BOH|1|IB|U|17|||A
6BOH|1|IB|G|18
6BOH|1|IB|G|19
6BOH|1|IB|U|20
6BOH|1|IB|A|21
6BOH|1|IB|G|22
6BOH|1|IB|C|23
6BOH|1|IB|U|24
6BOH|1|IB|C|25
6BOH|1|IB|G|26
6BOH|1|IB|U|27
6BOH|1|IB|C|28
*
6BOH|1|IB|G|42
6BOH|1|IB|A|43
6BOH|1|IB|A|44
6BOH|1|IB|G|45
6BOH|1|IB|G|46
6BOH|1|IB|U|47
6BOH|1|IB|C|48
6BOH|1|IB|G|49
6BOH|1|IB|U|50
6BOH|1|IB|C|51
*
6BOH|1|IB|G|63
6BOH|1|IB|G|64
6BOH|1|IB|C|65
6BOH|1|IB|C|66
6BOH|1|IB|C|67
6BOH|1|IB|C|68
6BOH|1|IB|C|69

Current chains

Chain IB: tRNA

Nearby chains

Chain GB: Large subunit ribosomal RNA; LSU rRNA
Chain IC: 50S ribosomal protein L33
Chain VC: 30S ribosomal protein S7
Chain ZC: 30S ribosomal protein S11

J3_6BOH_077