J3_6BOH_078
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GG(4SU)GG*CGU*AAGGUCGUCGG(5MU)(PSU)CAAAUCCGGCCC
- Length
- 33 nucleotides
- Bulged bases
- 6BOH|1|NC|4SU|8, 6BOH|1|NC|U|47
- QA status
- Modified nucleotides: 4SU, 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6BOH|1|NC|G|6
6BOH|1|NC|G|7
6BOH|1|NC|4SU|8
6BOH|1|NC|G|9
6BOH|1|NC|G|10
*
6BOH|1|NC|C|25
6BOH|1|NC|G|26
6BOH|1|NC|U|27
*
6BOH|1|NC|A|43
6BOH|1|NC|A|44
6BOH|1|NC|G|45
6BOH|1|NC|G|46
6BOH|1|NC|U|47
6BOH|1|NC|C|48
6BOH|1|NC|G|49
6BOH|1|NC|U|50
6BOH|1|NC|C|51
6BOH|1|NC|G|52
6BOH|1|NC|G|53
6BOH|1|NC|5MU|54
6BOH|1|NC|PSU|55
6BOH|1|NC|C|56
6BOH|1|NC|A|57
6BOH|1|NC|A|58
6BOH|1|NC|A|59
6BOH|1|NC|U|60
6BOH|1|NC|C|61
6BOH|1|NC|C|62
6BOH|1|NC|G|63
6BOH|1|NC|G|64
6BOH|1|NC|C|65
6BOH|1|NC|C|66
6BOH|1|NC|C|67
Current chains
- Chain NC
- tRNA
Nearby chains
- Chain BD
- 30S ribosomal protein S13
- Chain CC
- 50S ribosomal protein L27
- Chain FB
- Small subunit ribosomal RNA; SSU rRNA
- Chain GB
- Large subunit ribosomal RNA; LSU rRNA
- Chain MB
- 50S ribosomal protein L5
- Chain OC
- Peptide chain release factor 1
- Chain SB
- 50S ribosomal protein L16
Coloring options: