J3_6BOK_027
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6BOK_027 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.1186
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6BOK|1|DB|C|586
6BOK|1|DB|G|587
6BOK|1|DB|G|588
*
6BOK|1|DB|C|651
6BOK|1|DB|U|652
6BOK|1|DB|A|653
6BOK|1|DB|G|654
6BOK|1|DB|A|655
*
6BOK|1|DB|U|751
6BOK|1|DB|G|752
6BOK|1|DB|A|753
6BOK|1|DB|C|754
6BOK|1|DB|G|755
Current chains
- Chain DB
- 16S ribosomal RNA
Nearby chains
- Chain BD
- 30S ribosomal protein S17
- Chain SC
- 30S ribosomal protein S8
- Chain WC
- 30S ribosomal protein S12
- Chain ZC
- 30S ribosomal protein S15
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