J3_6BOK_041

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6BOK|1|EB|G|686, 6BOK|1|EB|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOK_041 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0667

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6BOK|1|EB|C|683
6BOK|1|EB|G|684
6BOK|1|EB|A|685
6BOK|1|EB|G|686
6BOK|1|EB|C|687
6BOK|1|EB|U|688
6BOK|1|EB|A|689
*
6BOK|1|EB|U|773
6BOK|1|EB|A|774
6BOK|1|EB|G|775
*
6BOK|1|EB|C|791
6BOK|1|EB|G|792
6BOK|1|EB|A|793
6BOK|1|EB|G|794

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain HB

50S ribosomal protein L2

Chain HC

50S ribosomal protein L34