J3_6BU8_001

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BU8_001 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.1149

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

6BU8|1|01|G|30
6BU8|1|01|C|31
*
6BU8|1|01|G|474
6BU8|1|01|C|475
6BU8|1|01|G|476
6BU8|1|01|A|477
6BU8|1|01|A|478
6BU8|1|01|A|479
6BU8|1|01|A|480
6BU8|1|01|G|481
*
6BU8|1|01|C|509
6BU8|1|01|C|510

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L20

Chain 23

50S ribosomal protein L24