3D structure

PDB id
6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with S1 domains 1 and 2 (Class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
6BU8|1|A|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6BU8_026 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.2625
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6BU8|1|A|C|1237
6BU8|1|A|A|1238
6BU8|1|A|A|1239
6BU8|1|A|U|1240
6BU8|1|A|G|1241
*
6BU8|1|A|C|1296
6BU8|1|A|G|1297
6BU8|1|A|U|1298
6BU8|1|A|A|1299
6BU8|1|A|G|1300
6BU8|1|A|U|1301
6BU8|1|A|C|1302
6BU8|1|A|C|1303
*
6BU8|1|A|G|1334
6BU8|1|A|U|1335
6BU8|1|A|C|1336
6BU8|1|A|G|1337

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain M
30S ribosomal protein S13
Chain X
Transfer RNA; tRNA

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