J3_6BUW_011

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

6BUW|1|QA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BUW_011 not in the Motif Atlas

Homologous match to J3_6CZR_025

Geometric discrepancy: 0.2976

The information below is about J3_6CZR_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.1

Basepair signature

cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

6BUW|1|QA|C|1116
6BUW|1|QA|G|1117
6BUW|1|QA|C|1118
*
6BUW|1|QA|G|1155
6BUW|1|QA|G|1156
6BUW|1|QA|A|1157
6BUW|1|QA|C|1158
6BUW|1|QA|U|1159
6BUW|1|QA|G|1160
6BUW|1|QA|C|1161
*
6BUW|1|QA|G|1175
6BUW|1|QA|A|1176
6BUW|1|QA|G|1177
6BUW|1|QA|G|1178
6BUW|1|QA|A|1179
6BUW|1|QA|A|1180
6BUW|1|QA|G|1181
6BUW|1|QA|G|1182
6BUW|1|QA|A|1183
6BUW|1|QA|G|1184

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QI

30S ribosomal protein S9

Chain QN

30S ribosomal protein S14 type Z