J3_6BUW_022

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BUW_022 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0801

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6BUW|1|RA|U|2091
6BUW|1|RA|U|2092
6BUW|1|RA|G|2093
*
6BUW|1|RA|C|2196
6BUW|1|RA|U|2197
6BUW|1|RA|A|2198
6BUW|1|RA|A|2199
6BUW|1|RA|C|2205
*
6BUW|1|RA|G|2219
6BUW|1|RA|G|2224
6BUW|1|RA|A|2225
6BUW|1|RA|C|2226
6BUW|1|RA|A|2227
6BUW|1|RA|G|2228

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RD

50S ribosomal protein L2

Chain RI

50S ribosomal protein L9