J3_6BUW_024

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6BUW|1|RA|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BUW_024 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0839

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6BUW|1|RA|C|2517
6BUW|1|RA|A|2518
6BUW|1|RA|U|2519
6BUW|1|RA|C|2520
*
6BUW|1|RA|G|2545
6BUW|1|RA|U|2546
6BUW|1|RA|U|2547
*
6BUW|1|RA|A|2561
6BUW|1|RA|U|2562
6BUW|1|RA|U|2563
6BUW|1|RA|A|2564
6BUW|1|RA|A|2565
6BUW|1|RA|A|2566
6BUW|1|RA|G|2567

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RO

50S ribosomal protein L14