J3_6BUW_069

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BUW_069 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1193

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

6BUW|1|XA|C|936
6BUW|1|XA|A|937
6BUW|1|XA|A|938
6BUW|1|XA|G|939
*
6BUW|1|XA|C|1344
6BUW|1|XA|U|1345
6BUW|1|XA|A|1346
6BUW|1|XA|G|1347
6BUW|1|XA|U|1348
6BUW|1|XA|A|1349
6BUW|1|XA|A|1350
*
6BUW|1|XA|U|1372
6BUW|1|XA|G|1373
6BUW|1|XA|A|1374
6BUW|1|XA|A|1375
6BUW|1|XA|U|1376
6BUW|1|XA|A|1377
6BUW|1|XA|C|1378
6BUW|1|XA|G|1379

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9