J3_6BY1_028

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6BY1|1|CA|U|686, 6BY1|1|CA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BY1_028 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1568

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6BY1|1|CA|U|683
6BY1|1|CA|G|684
6BY1|1|CA|A|685
6BY1|1|CA|U|686
6BY1|1|CA|C|687
6BY1|1|CA|U|688
6BY1|1|CA|A|689
*
6BY1|1|CA|U|773
6BY1|1|CA|G|774
6BY1|1|CA|G|775
*
6BY1|1|CA|C|791
6BY1|1|CA|A|792
6BY1|1|CA|A|793
6BY1|1|CA|A|794

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2